Index

_

__init__() (tiledbsoma_ml._csr.CSR_IO_Buffer method) (tiledbsoma_ml.ExperimentDataset method)

__iter__() (tiledbsoma_ml.ExperimentDataset method) __len__() (tiledbsoma_ml.ExperimentDataset method)

B

batch_size (tiledbsoma_ml._mini_batch_iterable.MiniBatchIterable attribute) (tiledbsoma_ml.ExperimentDataset attribute)

C

Chunks (in module tiledbsoma_ml._query_ids) chunks (tiledbsoma_ml._io_batch_iterable.IOBatchIterable attribute)

create() (tiledbsoma_ml._query_ids.QueryIDs class method) (tiledbsoma_ml.x_locator.XLocator class method) CSR_IO_Buffer (class in tiledbsoma_ml._csr)

D

dtype (tiledbsoma_ml._csr.CSR_IO_Buffer property)

E

epoch (tiledbsoma_ml.ExperimentDataset attribute)

experiment_dataloader() (in module tiledbsoma_ml) ExperimentDataset (class in tiledbsoma_ml)

F

from_ijd() (tiledbsoma_ml._csr.CSR_IO_Buffer static method)

from_pjd() (tiledbsoma_ml._csr.CSR_IO_Buffer static method)

G

get_distributed_rank_and_world_size() (in module tiledbsoma_ml._distributed)

get_worker_id_and_num() (in module tiledbsoma_ml._distributed)

I

init_multiprocessing() (in module tiledbsoma_ml._distributed) io_batch_ids (tiledbsoma_ml._io_batch_iterable.IOBatchIterable property) io_batch_iter (tiledbsoma_ml._mini_batch_iterable.MiniBatchIterable attribute)

io_batch_size (tiledbsoma_ml._io_batch_iterable.IOBatchIterable attribute) (tiledbsoma_ml.ExperimentDataset attribute) IOBatch (in module tiledbsoma_ml._io_batch_iterable) IOBatchIterable (class in tiledbsoma_ml._io_batch_iterable)

L

layer_name (tiledbsoma_ml.ExperimentDataset property)

M

maybe_squeeze() (tiledbsoma_ml._mini_batch_iterable.MiniBatchIterable method) measurement_name (tiledbsoma_ml.ExperimentDataset property) merge() (tiledbsoma_ml._csr.CSR_IO_Buffer static method) MiniBatch (in module tiledbsoma_ml._common) MiniBatchIterable (class in tiledbsoma_ml._mini_batch_iterable) module tiledbsoma_ml._common tiledbsoma_ml._csr tiledbsoma_ml._distributed tiledbsoma_ml._io_batch_iterable tiledbsoma_ml._mini_batch_iterable tiledbsoma_ml._query_ids tiledbsoma_ml.x_locator

N

n_workers (tiledbsoma_ml._query_ids.Partition attribute) nbytes (tiledbsoma_ml._csr.CSR_IO_Buffer property)

NDArrayJoinId (in module tiledbsoma_ml._common) nnz (tiledbsoma_ml._csr.CSR_IO_Buffer property)

O

obs (tiledbsoma_ml._io_batch_iterable.IOBatchIterable attribute) obs_column_names (tiledbsoma_ml._io_batch_iterable.IOBatchIterable attribute) (tiledbsoma_ml.ExperimentDataset attribute)

obs_joinids (tiledbsoma_ml._query_ids.QueryIDs attribute)

P

Partition (class in tiledbsoma_ml._query_ids)

partition (tiledbsoma_ml._query_ids.QueryIDs attribute) partitioned() (tiledbsoma_ml._query_ids.QueryIDs method)

Q

query_ids (tiledbsoma_ml.ExperimentDataset attribute)

QueryIDs (class in tiledbsoma_ml._query_ids)

R

random_split() (tiledbsoma_ml._query_ids.QueryIDs method) (tiledbsoma_ml.ExperimentDataset method) rank (tiledbsoma_ml._query_ids.Partition attribute) (tiledbsoma_ml.ExperimentDataset attribute)

return_sparse_X (tiledbsoma_ml._mini_batch_iterable.MiniBatchIterable attribute) (tiledbsoma_ml.ExperimentDataset attribute)

S

SamplingMethod (in module tiledbsoma_ml._query_ids) seed (tiledbsoma_ml._io_batch_iterable.IOBatchIterable attribute) (tiledbsoma_ml.ExperimentDataset attribute) set_epoch() (tiledbsoma_ml.ExperimentDataset method) shape (tiledbsoma_ml.ExperimentDataset property) shuffle (tiledbsoma_ml._io_batch_iterable.IOBatchIterable attribute) (tiledbsoma_ml.ExperimentDataset attribute)

shuffle_chunk_size (tiledbsoma_ml.ExperimentDataset attribute) shuffle_chunks() (tiledbsoma_ml._query_ids.QueryIDs method) slice_tonumpy() (tiledbsoma_ml._csr.CSR_IO_Buffer method) slice_toscipy() (tiledbsoma_ml._csr.CSR_IO_Buffer method) smallest_uint_dtype() (in module tiledbsoma_ml._csr) sort_indices() (tiledbsoma_ml._csr.CSR_IO_Buffer method)

T

tiledbsoma_ml._common module tiledbsoma_ml._csr module tiledbsoma_ml._distributed module tiledbsoma_ml._io_batch_iterable module

tiledbsoma_ml._mini_batch_iterable module tiledbsoma_ml._query_ids module tiledbsoma_ml.x_locator module

U

use_eager_fetch (tiledbsoma_ml._io_batch_iterable.IOBatchIterable attribute) (tiledbsoma_ml._mini_batch_iterable.MiniBatchIterable attribute) (tiledbsoma_ml.ExperimentDataset attribute)

V

var_joinids (tiledbsoma_ml._io_batch_iterable.IOBatchIterable attribute) (tiledbsoma_ml._query_ids.QueryIDs attribute)

W

worker_id (tiledbsoma_ml._query_ids.Partition attribute)

world_size (tiledbsoma_ml._query_ids.Partition attribute) (tiledbsoma_ml.ExperimentDataset attribute)

X

X (tiledbsoma_ml._io_batch_iterable.IOBatchIterable attribute)

x_locator (tiledbsoma_ml.ExperimentDataset attribute) XLocator (class in tiledbsoma_ml.x_locator)