An R implementation of the Stack of Matrices, Annotated (SOMA) API based on TileDB. SOMA is an open data model for representing annotated matrices, like those commonly used for single-cell data analysis. With tiledbsoma, users can import from and export to in-memory formats used by popular toolchains like Seurat, Bioconductor, and even AnnData using the companion Python package.

Installation

You can install the development version of tiledbsoma from GitHub with:

# install.packages("remotes")
remotes::install_github("tiledb-inc/tiledbsoma")