Package index • tiledbsoma

TileDB-SOMA

ConfigList: A Configuration List
IntIndexer: The SOMA Re-Indexer
PlatformConfig: Platform Configuration
SOMAAxisQuery: SOMA Axis Query
SOMAAxisQueryResult: SOMAExperiment Axis Query Result
SOMACollection: SOMA Collection
SOMACollectionCreate(): Create a SOMA Collection
SOMACollectionOpen(): Open a SOMA Collection
SOMADataFrame: SOMADataFrame
SOMADataFrameCreate(): Create a SOMA Data Frame
SOMADataFrameOpen(): Open a SOMA Data Frame
SOMADenseNDArray: SOMA Dense Nd-Array
SOMADenseNDArrayCreate(): Create a SOMA Dense ND Array
SOMADenseNDArrayOpen(): Open a SOMA Dense Nd Array
SOMAExperiment: SOMA Experiment
SOMAExperimentAxisQuery: SOMAExperiment Axis Query
SOMAExperimentCreate(): Create a SOMA Experiment
SOMAExperimentOpen(): Open SOMA Experiment
SOMAMeasurement: SOMA Measurement
SOMAMeasurementCreate(): Create a SOMA Measurement
SOMAMeasurementOpen(): Open SOMA Measurement
SOMAOpen(): Open a SOMA Object
SOMASparseNDArray: SOMA Sparse Nd-Array
SOMASparseNDArrayCreate(): Create a SOMA Sparse ND Array
SOMASparseNDArrayOpen(): Open a SOMA Sparse ND Array
SOMATileDBContext: SOMA TileDB Context
SparseReadIter: SOMA Read Iterator Over Sparse Matrices
TableReadIter: SOMA Read Iterator Over Arrow Tables
list_datasets() extract_dataset() load_dataset(): SOMA Example Datasets
matrixZeroBasedView: Zero-based Wrapper for Sparse Matrices
set_log_level(): Set TileDB-SOMA Logging Level
show_package_versions(): Display package versions
tiledbsoma_stats_enable() tiledbsoma_stats_disable() tiledbsoma_stats_reset() tiledbsoma_stats_dump() tiledbsoma_stats_show(): TileDB SOMA Statistics
write_soma(): Write a SOMA Object from an R Object
write_soma(<Seurat>): Write a Seurat object to a SOMA
write_soma(<SingleCellExperiment>): Write a SingleCellExperiment object to a SOMA
write_soma(<SummarizedExperiment>): Write a SummarizedExperiment object to a SOMA