Package index • tiledbsoma

TileDB-SOMA

ConfigList: A Configuration List

IntIndexer: The SOMA Re-Indexer

PlatformConfig: Platform Configuration

SOMAAxisQuery: SOMA Axis Query

SOMAAxisQueryResult: SOMAExperiment Axis Query Result

SOMACollection: SOMA Collection

SOMACollectionCreate(): Create SOMA Collection

SOMACollectionOpen(): Open SOMA Collection

SOMADataFrame: SOMADataFrame

SOMADataFrameCreate(): Create SOMA DataFrame

SOMADataFrameOpen(): Open SOMA DataFrame

SOMADenseNDArray: SOMADenseNDArray

SOMADenseNDArrayCreate(): Create SOMA Dense Nd Array

SOMADenseNDArrayOpen(): Open SOMA Dense Nd Array

SOMAExperiment: SOMA Experiment

SOMAExperimentAxisQuery: SOMAExperiment Axis Query

SOMAExperimentCreate(): Create SOMA Experiment

SOMAExperimentOpen(): Open SOMA Experiment

SOMAMeasurement: SOMA Measurement

SOMAMeasurementCreate(): Create SOMA Measurement

SOMAMeasurementOpen(): Open SOMA Measurement

SOMAOpen(): Open a SOMA Object

SOMASparseNDArray: SOMASparseNDArray

SOMASparseNDArrayCreate(): Create SOMA Sparse Nd Array

SOMASparseNDArrayOpen(): Open SOMA Sparse Nd Array

SOMATileDBContext: SOMA TileDB Context

SparseReadIter: SparseReadIter

TableReadIter: SOMA Read Iterator over Arrow Table

TileDBObject: TileDB Object Base Class

delete_metadata(): Delete metadata for given key

list_datasets() extract_dataset() load_dataset(): SOMA Example Datasets

get_all_metadata(): Read all metadata (as named list)

get_metadata(): Read metadata (as a string)

get_metadata_num(): Get nnumber of metadata items

has_metadata(): Check for metadata given key

matrixZeroBasedView: matrixZeroBasedView is a wrapper shim for a matrix or Matrix::sparseMatrix providing

set_log_level(): Set the logging level for the R package and underlying C++ library

set_metadata(): Set metadata (as a string)

show_package_versions(): Display package versions

soma_context(): Create and cache a SOMA Context Object

tiledbsoma_stats_enable() tiledbsoma_stats_disable() tiledbsoma_stats_reset() tiledbsoma_stats_dump() tiledbsoma_stats_show(): TileDB SOMA statistics

write_soma(): Write a SOMA Object from an R Object

write_soma(<Seurat>): Write a Seurat object to a SOMA

write_soma(<SingleCellExperiment>): Write a SingleCellExperiment object to a SOMA

write_soma(<SummarizedExperiment>): Write a SummarizedExperiment object to a SOMA