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TileDB-SOMA

ConfigList
A Configuration List
PlatformConfig
Platform Configuration
SOMAAxisQuery
SOMA Axis Query
SOMAAxisQueryResult
SOMAExperiment Axis Query Result
SOMACollection
SOMA Collection
SOMACollectionCreate()
Create SOMA Collection
SOMACollectionOpen()
Open SOMA Collection
SOMADataFrame
SOMADataFrame
SOMADataFrameCreate()
Create SOMA DataFrame
SOMADataFrameOpen()
Open SOMA DataFrame
SOMADenseNDArray
SOMADenseNDArray
SOMADenseNDArrayCreate()
Create SOMA Dense Nd Array
SOMADenseNDArrayOpen()
Open SOMA Dense Nd Array
SOMAExperiment
SOMA Experiment
SOMAExperimentAxisQuery
SOMAExperiment Axis Query
SOMAExperimentCreate()
Create SOMA Experiment
SOMAExperimentOpen()
Open SOMA Experiment
SOMAMeasurement
SOMA Measurement
SOMAMeasurementCreate()
Create SOMA Measurement
SOMAMeasurementOpen()
Open SOMA Measurement
SOMAOpen()
Open a SOMA Object
SOMASparseNDArray
SOMASparseNDArray
SOMASparseNDArrayCreate()
Create SOMA Sparse Nd Array
SOMASparseNDArrayOpen()
Open SOMA Sparse Nd Array
SOMATileDBContext
SOMA TileDB Context
SparseReadIter
SparseReadIter
TableReadIter
SOMA Read Iterator over Arrow Table
TileDBObject
TileDB Object Base Class
list_datasets() extract_dataset() load_dataset()
SOMA Example Datasets
matrixZeroBasedView
matrixZeroBasedView is a wrapper shim for a matrix or Matrix::sparseMatrix providing
set_log_level()
Set the logging level for the R package and underlying C++ library
show_package_versions()
Display package versions
tiledbsoma_stats_enable() tiledbsoma_stats_disable() tiledbsoma_stats_reset() tiledbsoma_stats_dump() tiledbsoma_stats_show()
TileDB SOMA statistics
write_soma()
Write a SOMA Object from an R Object
write_soma(<Seurat>)
Write a Seurat object to a SOMA
write_soma(<SingleCellExperiment>)
Write a SingleCellExperiment object to a SOMA
write_soma(<SummarizedExperiment>)
Write a SummarizedExperiment object to a SOMA